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Update tools, pkgs and extras to use fully bootstrapped [Stageˣ]-derived toolchain for building Talos and its dependencies. This brings in changes related to root being usrmerged now, so some paths have changed. Extras have been cleaned up: use only the needed package. Addresses: #10187 Signed-off-by: Dmitry Sharshakov <dmitry.sharshakov@siderolabs.com>