diff --git a/cmd/promtool/main.go b/cmd/promtool/main.go
index 6555ccc6fa..6b897ba1ae 100644
--- a/cmd/promtool/main.go
+++ b/cmd/promtool/main.go
@@ -180,6 +180,7 @@ func main() {
 	queryInstantCmd.Arg("server", "Prometheus server to query.").Required().URLVar(&serverURL)
 	queryInstantExpr := queryInstantCmd.Arg("expr", "PromQL query expression.").Required().String()
 	queryInstantTime := queryInstantCmd.Flag("time", "Query evaluation time (RFC3339 or Unix timestamp).").String()
+	queryInstantHeaders := queryInstantCmd.Flag("header", "Extra headers to send to server.").StringMap()
 
 	queryRangeCmd := queryCmd.Command("range", "Run range query.")
 	queryRangeCmd.Arg("server", "Prometheus server to query.").Required().URLVar(&serverURL)
@@ -393,7 +394,7 @@ func main() {
 		os.Exit(PushMetrics(remoteWriteURL, httpRoundTripper, *pushMetricsHeaders, *pushMetricsTimeout, *pushMetricsProtoMsg, *pushMetricsLabels, *metricFiles...))
 
 	case queryInstantCmd.FullCommand():
-		os.Exit(QueryInstant(serverURL, httpRoundTripper, *queryInstantExpr, *queryInstantTime, p))
+		os.Exit(QueryInstant(serverURL, httpRoundTripper, *queryInstantHeaders, *queryInstantExpr, *queryInstantTime, p))
 
 	case queryRangeCmd.FullCommand():
 		os.Exit(QueryRange(serverURL, httpRoundTripper, *queryRangeHeaders, *queryRangeExpr, *queryRangeBegin, *queryRangeEnd, *queryRangeStep, p))
diff --git a/cmd/promtool/main_test.go b/cmd/promtool/main_test.go
index 297dd35d70..bbc52355a9 100644
--- a/cmd/promtool/main_test.go
+++ b/cmd/promtool/main_test.go
@@ -95,7 +95,7 @@ func TestQueryInstant(t *testing.T) {
 	require.NoError(t, err)
 
 	p := &promqlPrinter{}
-	exitCode := QueryInstant(urlObject, http.DefaultTransport, "up", "300", p)
+	exitCode := QueryInstant(urlObject, http.DefaultTransport, map[string]string{}, "up", "300", p)
 	require.Equal(t, "/api/v1/query", getRequest().URL.Path)
 	form := getRequest().Form
 	require.Equal(t, "up", form.Get("query"))
@@ -103,6 +103,22 @@ func TestQueryInstant(t *testing.T) {
 	require.Equal(t, 0, exitCode)
 }
 
+func TestQueryInstantHeaders(t *testing.T) {
+	t.Parallel()
+	s, getRequest := mockServer(200, `{"status": "success", "data": {"resultType": "vector", "result": []}}`)
+	defer s.Close()
+
+	urlObject, err := url.Parse(s.URL)
+	require.NoError(t, err)
+
+	p := &promqlPrinter{}
+	headers := map[string]string{"X-Scope-OrgID": "prom", "X-Custom": "value"}
+	exitCode := QueryInstant(urlObject, http.DefaultTransport, headers, "up", "300", p)
+	require.Equal(t, 0, exitCode)
+	require.Equal(t, "prom", getRequest().Header.Get("X-Scope-OrgID"))
+	require.Equal(t, "value", getRequest().Header.Get("X-Custom"))
+}
+
 func mockServer(code int, body string) (*httptest.Server, func() *http.Request) {
 	var req *http.Request
 	server := httptest.NewServer(http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {
diff --git a/cmd/promtool/query.go b/cmd/promtool/query.go
index 1342f148f8..ef0a2368ef 100644
--- a/cmd/promtool/query.go
+++ b/cmd/promtool/query.go
@@ -61,8 +61,8 @@ func newAPI(url *url.URL, roundTripper http.RoundTripper, headers map[string]str
 }
 
 // QueryInstant performs an instant query against a Prometheus server.
-func QueryInstant(url *url.URL, roundTripper http.RoundTripper, query, evalTime string, p printer) int {
-	api, err := newAPI(url, roundTripper, nil)
+func QueryInstant(url *url.URL, roundTripper http.RoundTripper, headers map[string]string, query, evalTime string, p printer) int {
+	api, err := newAPI(url, roundTripper, headers)
 	if err != nil {
 		fmt.Fprintln(os.Stderr, "error creating API client:", err)
 		return failureExitCode
diff --git a/docs/command-line/promtool.md b/docs/command-line/promtool.md
index e8ffa75aaa..28a0d99696 100644
--- a/docs/command-line/promtool.md
+++ b/docs/command-line/promtool.md
@@ -240,6 +240,7 @@ Run instant query.
 | Flag | Description |
 | --- | --- |
 | <code class="text-nowrap">--time</code> | Query evaluation time (RFC3339 or Unix timestamp). |
+| <code class="text-nowrap">--header</code> | Extra headers to send to server. |