ghorg/cmd/root.go

package cmd

import (
	"errors"
	"fmt"
	"net/url"
	"os"
	"path/filepath"

	"github.com/spf13/cobra"
	"github.com/spf13/viper"

	"github.com/gabrie30/ghorg/colorlog"
	"github.com/gabrie30/ghorg/configs"
)

var (
	protocol                     string
	path                         string
	outputDirName                string
	outputDirAbsolutePath        string
	branch                       string
	token                        string
	cloneType                    string
	scmType                      string
	bitbucketUsername            string
	color                        string
	baseURL                      string
	concurrency                  string
	cloneDepth                   string
	exitCodeOnCloneInfos         string
	exitCodeOnCloneIssues        string
	outputDir                    string
	topics                       string
	gitFilter                    string
	targetCloneSource            string
	matchPrefix                  string
	excludeMatchPrefix           string
	matchRegex                   string
	excludeMatchRegex            string
	config                       string
	gitlabGroupExcludeMatchRegex string
	ghorgIgnorePath              string
	targetReposPath              string
	ghorgReClonePath             string
	githubAppID                  string
	githubAppPemPath             string
	githubAppInstallationID      string
	githubUserOption             string
	githubFilterLanguage         string
	cronTimerMinutes             string
	recloneServerPort            string
	includeSubmodules            bool
	skipArchived                 bool
	skipForks                    bool
	backup                       bool
	noClean                      bool
	dryRun                       bool
	prune                        bool
	pruneNoConfirm               bool
	cloneWiki                    bool
	cloneSnippets                bool
	preserveDir                  bool
	insecureGitlabClient         bool
	insecureGiteaClient          bool
	fetchAll                     bool
	ghorgReCloneQuiet            bool
	ghorgReCloneList             bool
	ghorgReCloneEnvConfigOnly    bool
	githubTokenFromGithubApp     bool
	noToken                      bool
	quietMode                    bool
	noDirSize                    bool
	ghorgStatsEnabled            bool
	ghorgPreserveScmHostname     bool
	ghorgPruneUntouched          bool
	ghorgPruneUntouchedNoConfirm bool
	cloneErrors                  []string
	cloneInfos                   []string
)

// rootCmd represents the base command when called without any subcommands
var rootCmd = &cobra.Command{
	Use:   "ghorg",
	Short: "Ghorg is a fast way to clone multiple repos into a single directory",
	Long:  `Ghorg is a fast way to clone multiple repos into a single directory`,
	Run: func(cmd *cobra.Command, argz []string) {
		fmt.Println("For help run: ghorg clone --help")
	},
}

func getHostname() string {
	var hostname string
	baseURL := os.Getenv("GHORG_SCM_BASE_URL")
	if baseURL != "" {
		// Parse the URL to extract the hostname
		parsedURL, err := url.Parse(baseURL)
		if err != nil {
			colorlog.PrintError(fmt.Sprintf("Error parsing GHORG_SCM_BASE_URL clone may be affected, error: %v", err))
		}
		// Append the hostname to the absolute path
		hostname = parsedURL.Hostname()
	} else {
		// Use the predefined hostname based on the SCM type
		hostname = configs.GetCloudScmTypeHostnames()
	}

	return hostname
}

// updateAbsolutePathToCloneToWithHostname modifies the absolute path by appending the hostname if the user has enabled it,
// supporting the GHORG_PRESERVE_SCM_HOSTNAME feature. It checks the GHORG_PRESERVE_SCM_HOSTNAME environment variable, and if set to "true",
// it uses the hostname from GHORG_SCM_BASE_URL if available, otherwise, it defaults to a predefined hostname based on the SCM type.
func updateAbsolutePathToCloneToWithHostname() {
	// Verify if GHORG_PRESERVE_SCM_HOSTNAME is set to "true"
	if os.Getenv("GHORG_PRESERVE_SCM_HOSTNAME") == "true" {
		// Retrieve the hostname from the environment variable
		hostname := getHostname()
		absolutePath := os.Getenv("GHORG_ABSOLUTE_PATH_TO_CLONE_TO")
		os.Setenv("GHORG_ORIGINAL_ABSOLUTE_PATH_TO_CLONE_TO", absolutePath)
		absolutePath = filepath.Join(absolutePath, hostname)
		os.Setenv("GHORG_ABSOLUTE_PATH_TO_CLONE_TO", configs.EnsureTrailingSlashOnFilePath(absolutePath))
	}
}

// reads in configuration file and updates anything not set to default
func getOrSetDefaults(envVar string) {
	if envVar == "GHORG_COLOR" {
		if color == "enabled" {
			os.Setenv("GHORG_COLOR", "enabled")
			return
		}

		if color == "disabled" {
			os.Setenv("GHORG_COLOR", "disabled")
			return
		}

		if viper.GetString(envVar) == "enabled" {
			os.Setenv("GHORG_COLOR", "enabled")
			return
		}
	}

	// When a user does not set value in $HOME/.config/ghorg/conf.yaml set the default values, else set env to what they have added to the file.
	if viper.GetString(envVar) == "" {
		switch envVar {
		case "GHORG_ABSOLUTE_PATH_TO_CLONE_TO":
			os.Setenv(envVar, configs.GetAbsolutePathToCloneTo())
		case "GHORG_IGNORE_PATH":
			os.Setenv(envVar, configs.GhorgIgnoreLocation())
		case "GHORG_RECLONE_PATH":
			os.Setenv(envVar, configs.GhorgReCloneLocation())
		case "GHORG_CLONE_PROTOCOL":
			os.Setenv(envVar, "https")
		case "GHORG_CLONE_TYPE":
			os.Setenv(envVar, "org")
		case "GHORG_SCM_TYPE":
			os.Setenv(envVar, "github")
		case "GHORG_SKIP_ARCHIVED":
			os.Setenv(envVar, "false")
		case "GHORG_INCLUDE_SUBMODULES":
			os.Setenv(envVar, "false")
		case "GHORG_SKIP_FORKS":
			os.Setenv(envVar, "false")
		case "GHORG_CLONE_WIKI":
			os.Setenv(envVar, "false")
		case "GHORG_CLONE_SNIPPETS":
			os.Setenv(envVar, "false")
		case "GHORG_NO_CLEAN":
			os.Setenv(envVar, "false")
		case "GHORG_CRON_TIMER_MINUTES":
			os.Setenv(envVar, "60")
		case "GHORG_RECLONE_SERVER_PORT":
			os.Setenv(envVar, ":8080")
		case "GHORG_FETCH_ALL":
			os.Setenv(envVar, "false")
		case "GHORG_DRY_RUN":
			os.Setenv(envVar, "false")
		case "GHORG_PRUNE":
			os.Setenv(envVar, "false")
		case "GHORG_PRUNE_NO_CONFIRM":
			os.Setenv(envVar, "false")
		case "GHORG_PRUNE_UNTOUCHED":
			os.Setenv(envVar, "false")
		case "GHORG_PRUNE_UNTOUCHED_NO_CONFIRM":
			os.Setenv(envVar, "false")
		case "GHORG_INSECURE_GITLAB_CLIENT":
			os.Setenv(envVar, "false")
		case "GHORG_INSECURE_GITEA_CLIENT":
			os.Setenv(envVar, "false")
		case "GHORG_GITHUB_USER_OPTION":
			os.Setenv(envVar, "owner")
		case "GHORG_BACKUP":
			os.Setenv(envVar, "false")
		case "GHORG_PRESERVE_SCM_HOSTNAME":
			os.Setenv(envVar, "false")
		case "GHORG_NO_TOKEN":
			os.Setenv(envVar, "false")
		case "GHORG_NO_DIR_SIZE":
			os.Setenv(envVar, "false")
		case "GHORG_RECLONE_ENV_CONFIG_ONLY":
			os.Setenv(envVar, "false")
		case "GHORG_RECLONE_QUIET":
			os.Setenv(envVar, "false")
		case "GHORG_COLOR":
			os.Setenv(envVar, "disabled")
		case "GHORG_PRESERVE_DIRECTORY_STRUCTURE":
			os.Setenv(envVar, "false")
		case "GHORG_CONCURRENCY":
			os.Setenv(envVar, "25")
		case "GHORG_QUIET":
			os.Setenv(envVar, "false")
		case "GHORG_STATS_ENABLED":
			os.Setenv(envVar, "false")
		case "GHORG_EXIT_CODE_ON_CLONE_INFOS":
			os.Setenv(envVar, "0")
		case "GHORG_EXIT_CODE_ON_CLONE_ISSUES":
			os.Setenv(envVar, "1")
		case "GHORG_GITHUB_TOKEN_FROM_GITHUB_APP":
			os.Setenv(envVar, "false")
		}
	} else {
		s := viper.GetString(envVar)
		// envs that need a trailing slash
		if envVar == "GHORG_SCM_BASE_URL" {
			os.Setenv(envVar, configs.EnsureTrailingSlashOnURL(s))
		} else if envVar == "GHORG_ABSOLUTE_PATH_TO_CLONE_TO" {
			os.Setenv(envVar, configs.EnsureTrailingSlashOnFilePath(s))
		} else {
			os.Setenv(envVar, s)
		}
	}

	if os.Getenv("GHORG_DEBUG") != "" {
		fmt.Printf("%s: %s\n", envVar, os.Getenv(envVar))
	}
}

func InitConfig() {
	curDir, _ := os.Getwd()
	localConfig := filepath.Join(curDir, "ghorg.yaml")

	if config != "" {
		viper.SetConfigFile(config)
		os.Setenv("GHORG_CONFIG", config)
	} else if os.Getenv("GHORG_CONFIG") != "" {
		// TODO maybe check if config is valid etc ...
		viper.SetConfigFile(os.Getenv("GHORG_CONFIG"))
	} else if _, err := os.Stat(localConfig); !errors.Is(err, os.ErrNotExist) {
		viper.SetConfigFile(localConfig)
		os.Setenv("GHORG_CONFIG", localConfig)
	} else {
		config = configs.DefaultConfFile()
		viper.SetConfigType("yaml")
		viper.AddConfigPath(configs.GhorgConfDir())
		viper.SetConfigName("conf")
		os.Setenv("GHORG_CONFIG", configs.DefaultConfFile())
	}

	if err := viper.ReadInConfig(); err != nil {
		if _, ok := err.(viper.ConfigFileNotFoundError); ok {
			os.Setenv("GHORG_CONFIG", "none")
		} else {
			colorlog.PrintError(fmt.Sprintf("Something unexpected happened reading configuration file: %s, err: %s", os.Getenv("GHORG_CONFIG"), err))
			os.Exit(1)
		}
	}

	if os.Getenv("GHORG_DEBUG") != "" {
		fmt.Println("-------- Setting Default ENV values ---------")
		if os.Getenv("GHORG_CONCURRENCY_DEBUG") == "" {
			fmt.Println("Setting concurrency to 1, this can be overwritten by setting GHORG_CONCURRENCY_DEBUG; however when using concurrency with GHORG_DEBUG, not all debugging output will be printed in serial order.")
			os.Setenv("GHORG_CONCURRENCY", "1")
		}
	}

	getOrSetDefaults("GHORG_ABSOLUTE_PATH_TO_CLONE_TO")
	getOrSetDefaults("GHORG_BRANCH")
	getOrSetDefaults("GHORG_CLONE_PROTOCOL")
	getOrSetDefaults("GHORG_CLONE_TYPE")
	getOrSetDefaults("GHORG_SCM_TYPE")
	getOrSetDefaults("GHORG_PRESERVE_SCM_HOSTNAME")
	getOrSetDefaults("GHORG_SKIP_ARCHIVED")
	getOrSetDefaults("GHORG_SKIP_FORKS")
	getOrSetDefaults("GHORG_NO_CLEAN")
	getOrSetDefaults("GHORG_NO_TOKEN")
	getOrSetDefaults("GHORG_NO_DIR_SIZE")
	getOrSetDefaults("GHORG_FETCH_ALL")
	getOrSetDefaults("GHORG_PRUNE")
	getOrSetDefaults("GHORG_PRUNE_NO_CONFIRM")
	getOrSetDefaults("GHORG_PRUNE_UNTOUCHED")
	getOrSetDefaults("GHORG_PRUNE_UNTOUCHED_NO_CONFIRM")
	getOrSetDefaults("GHORG_DRY_RUN")
	getOrSetDefaults("GHORG_GITHUB_USER_OPTION")
	getOrSetDefaults("GHORG_CLONE_WIKI")
	getOrSetDefaults("GHORG_CLONE_SNIPPETS")
	getOrSetDefaults("GHORG_INSECURE_GITLAB_CLIENT")
	getOrSetDefaults("GHORG_INSECURE_GITEA_CLIENT")
	getOrSetDefaults("GHORG_BACKUP")
	getOrSetDefaults("GHORG_RECLONE_ENV_CONFIG_ONLY")
	getOrSetDefaults("GHORG_RECLONE_QUIET")
	getOrSetDefaults("GHORG_CONCURRENCY")
	getOrSetDefaults("GHORG_INCLUDE_SUBMODULES")
	getOrSetDefaults("GHORG_EXIT_CODE_ON_CLONE_INFOS")
	getOrSetDefaults("GHORG_EXIT_CODE_ON_CLONE_ISSUES")
	getOrSetDefaults("GHORG_STATS_ENABLED")
	getOrSetDefaults("GHORG_CRON_TIMER_MINUTES")
	getOrSetDefaults("GHORG_RECLONE_SERVER_PORT")
	// Optionally set
	getOrSetDefaults("GHORG_TARGET_REPOS_PATH")
	getOrSetDefaults("GHORG_CLONE_DEPTH")
	getOrSetDefaults("GHORG_GITHUB_TOKEN")
	getOrSetDefaults("GHORG_GITHUB_TOKEN_FROM_GITHUB_APP")
	getOrSetDefaults("GHORG_GITHUB_FILTER_LANGUAGE")
	getOrSetDefaults("GHORG_COLOR")
	getOrSetDefaults("GHORG_TOPICS")
	getOrSetDefaults("GHORG_GITLAB_TOKEN")
	getOrSetDefaults("GHORG_BITBUCKET_USERNAME")
	getOrSetDefaults("GHORG_BITBUCKET_APP_PASSWORD")
	getOrSetDefaults("GHORG_BITBUCKET_OAUTH_TOKEN")
	getOrSetDefaults("GHORG_SCM_BASE_URL")
	getOrSetDefaults("GHORG_PRESERVE_DIRECTORY_STRUCTURE")
	getOrSetDefaults("GHORG_OUTPUT_DIR")
	getOrSetDefaults("GHORG_MATCH_REGEX")
	getOrSetDefaults("GHORG_EXCLUDE_MATCH_REGEX")
	getOrSetDefaults("GHORG_MATCH_PREFIX")
	getOrSetDefaults("GHORG_EXCLUDE_MATCH_PREFIX")
	getOrSetDefaults("GHORG_GITLAB_GROUP_EXCLUDE_MATCH_REGEX")
	getOrSetDefaults("GHORG_IGNORE_PATH")
	getOrSetDefaults("GHORG_RECLONE_PATH")
	getOrSetDefaults("GHORG_QUIET")
	getOrSetDefaults("GHORG_GIT_FILTER")
	getOrSetDefaults("GHORG_GITEA_TOKEN")
	getOrSetDefaults("GHORG_INSECURE_GITEA_CLIENT")
	getOrSetDefaults("GHORG_GITHUB_APP_PEM_PATH")
	getOrSetDefaults("GHORG_GITHUB_APP_INSTALLATION_ID")
	getOrSetDefaults("GHORG_GITHUB_APP_ID")

	if os.Getenv("GHORG_DEBUG") != "" {
		viper.Debug()
		fmt.Println("Viper config file used:", viper.ConfigFileUsed())
		fmt.Printf("GHORG_CONFIG SET TO: %s\n", os.Getenv("GHORG_CONFIG"))
	}
}

func init() {
	cobra.OnInitialize(InitConfig)

	rootCmd.PersistentFlags().StringVar(&color, "color", "", "GHORG_COLOR - toggles colorful output, enabled/disabled (default: disabled)")
	rootCmd.PersistentFlags().StringVar(&config, "config", "", "GHORG_CONFIG - manually set the path to your config file")

	viper.SetDefault("config", configs.DefaultConfFile())
	viper.AutomaticEnv()

	_ = viper.BindPFlag("color", rootCmd.PersistentFlags().Lookup("color"))
	_ = viper.BindPFlag("config", rootCmd.PersistentFlags().Lookup("config"))

	cloneCmd.Flags().StringVar(&targetReposPath, "target-repos-path", "", "GHORG_TARGET_REPOS_PATH - Path to file with list of repo names to clone, file should contain one repo name per line")
	cloneCmd.Flags().StringVar(&protocol, "protocol", "", "GHORG_CLONE_PROTOCOL - Protocol to clone with, ssh or https, (default https)")
	cloneCmd.Flags().StringVarP(&path, "path", "p", "", "GHORG_ABSOLUTE_PATH_TO_CLONE_TO - Absolute path to the home for ghorg clones. Must start with / (default $HOME/ghorg)")
	cloneCmd.Flags().StringVarP(&branch, "branch", "b", "", "GHORG_BRANCH - Branch left checked out for each repo cloned (default master)")
	cloneCmd.Flags().StringVarP(&token, "token", "t", "", "GHORG_GITHUB_TOKEN/GHORG_GITLAB_TOKEN/GHORG_GITEA_TOKEN/GHORG_BITBUCKET_APP_PASSWORD/GHORG_BITBUCKET_OAUTH_TOKEN - scm token to clone with")
	cloneCmd.Flags().StringVarP(&bitbucketUsername, "bitbucket-username", "", "", "GHORG_BITBUCKET_USERNAME - Bitbucket only: username associated with the app password")
	cloneCmd.Flags().StringVarP(&scmType, "scm", "s", "", "GHORG_SCM_TYPE - Type of scm used, github, gitlab, gitea or bitbucket (default github)")
	cloneCmd.Flags().StringVarP(&cloneType, "clone-type", "c", "", "GHORG_CLONE_TYPE - Clone target type, user or org (default org)")
	cloneCmd.Flags().BoolVar(&skipArchived, "skip-archived", false, "GHORG_SKIP_ARCHIVED - Skips archived repos, github/gitlab/gitea only")
	cloneCmd.Flags().BoolVar(&noClean, "no-clean", false, "GHORG_NO_CLEAN - Only clones new repos and does not perform a git clean on existing repos")
	cloneCmd.Flags().BoolVar(&prune, "prune", false, "GHORG_PRUNE - Deletes all files/directories found in your local clone directory that are not found on the remote (e.g., after remote deletion).  With GHORG_SKIP_ARCHIVED set, archived repositories will also be pruned from your local clone.  Will prompt before deleting any files unless used in combination with --prune-no-confirm")
	cloneCmd.Flags().BoolVar(&pruneNoConfirm, "prune-no-confirm", false, "GHORG_PRUNE_NO_CONFIRM - Don't prompt on every prune candidate, just delete")
	cloneCmd.Flags().BoolVar(&fetchAll, "fetch-all", false, "GHORG_FETCH_ALL - Fetches all remote branches for each repo by running a git fetch --all")
	cloneCmd.Flags().BoolVar(&dryRun, "dry-run", false, "GHORG_DRY_RUN - Perform a dry run of the clone; fetches repos but does not clone them")
	cloneCmd.Flags().BoolVar(&insecureGitlabClient, "insecure-gitlab-client", false, "GHORG_INSECURE_GITLAB_CLIENT - Skip TLS certificate verification for hosted gitlab instances")
	cloneCmd.Flags().BoolVar(&insecureGiteaClient, "insecure-gitea-client", false, "GHORG_INSECURE_GITEA_CLIENT - Must be set to clone from a Gitea instance using http")
	cloneCmd.Flags().BoolVar(&cloneWiki, "clone-wiki", false, "GHORG_CLONE_WIKI - Additionally clone the wiki page for repo")
	cloneCmd.Flags().BoolVar(&cloneSnippets, "clone-snippets", false, "GHORG_CLONE_SNIPPETS - Additionally clone all snippets, gitlab only")
	cloneCmd.Flags().BoolVar(&skipForks, "skip-forks", false, "GHORG_SKIP_FORKS - Skips repo if its a fork, github/gitlab/gitea only")
	cloneCmd.Flags().BoolVar(&noToken, "no-token", false, "GHORG_NO_TOKEN - Allows you to run ghorg with no token (GHORG_<SCM>_TOKEN), SCM server needs to specify no auth required for api calls")
	cloneCmd.Flags().BoolVar(&noDirSize, "no-dir-size", false, "GHORG_NO_DIR_SIZE - Skips the calculation of the output directory size at the end of a clone operation. This can save time, especially when cloning a large number of repositories.")
	cloneCmd.Flags().BoolVar(&preserveDir, "preserve-dir", false, "GHORG_PRESERVE_DIRECTORY_STRUCTURE - Clones repos in a directory structure that matches gitlab namespaces eg company/unit/subunit/app would clone into ghorg/unit/subunit/app, gitlab only")
	cloneCmd.Flags().BoolVar(&backup, "backup", false, "GHORG_BACKUP - Backup mode, clone as mirror, no working copy (ignores branch parameter)")
	cloneCmd.Flags().BoolVar(&quietMode, "quiet", false, "GHORG_QUIET - Emit critical output only")
	cloneCmd.Flags().BoolVar(&includeSubmodules, "include-submodules", false, "GHORG_INCLUDE_SUBMODULES - Include submodules in all clone and pull operations.")
	cloneCmd.Flags().BoolVar(&ghorgStatsEnabled, "stats-enabled", false, "GHORG_STATS_ENABLED - Creates a CSV in the GHORG_ABSOLUTE_PATH_TO_CLONE_TO called _ghorg_stats.csv with info about each clone. This allows you to track clone data over time such as number of commits and size in megabytes of the clone directory.")
	cloneCmd.Flags().BoolVar(&ghorgPreserveScmHostname, "preserve-scm-hostname", false, "GHORG_PRESERVE_SCM_HOSTNAME - Appends the scm hostname to the GHORG_ABSOLUTE_PATH_TO_CLONE_TO which will organize your clones into specific folders by the scm provider. e.g. /github.com/kuberentes")
	cloneCmd.Flags().BoolVar(&ghorgPruneUntouched, "prune-untouched", false, "GHORG_PRUNE_UNTOUCHED - Prune repositories that don't have any local changes, see sample-conf.yaml for more details")
	cloneCmd.Flags().BoolVar(&ghorgPruneUntouchedNoConfirm, "prune-untouched-no-confirm", false, "GHORG_PRUNE_UNTOUCHED_NO_CONFIRM - Automatically delete repos without showing an interactive confirmation prompt.")
	cloneCmd.Flags().StringVarP(&baseURL, "base-url", "", "", "GHORG_SCM_BASE_URL - Change SCM base url, for on self hosted instances (currently gitlab, gitea and github (use format of https://git.mydomain.com/api/v3))")
	cloneCmd.Flags().StringVarP(&concurrency, "concurrency", "", "", "GHORG_CONCURRENCY - Max goroutines to spin up while cloning (default 25)")
	cloneCmd.Flags().StringVarP(&cloneDepth, "clone-depth", "", "", "GHORG_CLONE_DEPTH - Create a shallow clone with a history truncated to the specified number of commits")
	cloneCmd.Flags().StringVarP(&topics, "topics", "", "", "GHORG_TOPICS - Comma separated list of github/gitea topics to filter for")
	cloneCmd.Flags().StringVarP(&outputDir, "output-dir", "", "", "GHORG_OUTPUT_DIR - Name of directory repos will be cloned into (default name of org/repo being cloned")
	cloneCmd.Flags().StringVarP(&matchPrefix, "match-prefix", "", "", "GHORG_MATCH_PREFIX - Only clone repos with matching prefix, can be a comma separated list")
	cloneCmd.Flags().StringVarP(&excludeMatchPrefix, "exclude-match-prefix", "", "", "GHORG_EXCLUDE_MATCH_PREFIX - Exclude cloning repos with matching prefix, can be a comma separated list")
	cloneCmd.Flags().StringVarP(&matchRegex, "match-regex", "", "", "GHORG_MATCH_REGEX - Only clone repos that match name to regex provided")
	cloneCmd.Flags().StringVarP(&excludeMatchRegex, "exclude-match-regex", "", "", "GHORG_EXCLUDE_MATCH_REGEX - Exclude cloning repos that match name to regex provided")
	cloneCmd.Flags().StringVarP(&gitlabGroupExcludeMatchRegex, "gitlab-group-exclude-match-regex", "", "", "GHORG_GITLAB_GROUP_EXCLUDE_MATCH_REGEX - Exclude cloning gitlab groups that match name to regex provided")
	cloneCmd.Flags().StringVarP(&ghorgIgnorePath, "ghorgignore-path", "", "", "GHORG_IGNORE_PATH - If you want to set a path other than $HOME/.config/ghorg/ghorgignore for your ghorgignore")
	cloneCmd.Flags().StringVarP(&exitCodeOnCloneInfos, "exit-code-on-clone-infos", "", "", "GHORG_EXIT_CODE_ON_CLONE_INFOS - Allows you to control the exit code when ghorg runs into a problem (info level message) cloning a repo from the remote. Info messages will appear after a clone is complete, similar to success messages. (default 0)")
	cloneCmd.Flags().StringVarP(&exitCodeOnCloneIssues, "exit-code-on-clone-issues", "", "", "GHORG_EXIT_CODE_ON_CLONE_ISSUES - Allows you to control the exit code when ghorg runs into a problem (issue level message) cloning a repo from the remote. Issue messages will appear after a clone is complete, similar to success messages (default 1)")
	cloneCmd.Flags().StringVarP(&gitFilter, "git-filter", "", "", "GHORG_GIT_FILTER - Allows you to pass arguments to git's filter flag. Useful for filtering out binary objects from repos with --git-filter=blob:none, this requires git version 2.19 or greater.")
	cloneCmd.Flags().BoolVarP(&githubTokenFromGithubApp, "github-token-from-github-app", "", false, "GHORG_GITHUB_TOKEN_FROM_GITHUB_APP - Indicate that the Github token should be treated as an app token. Needed if you already obtained a github app token outside the context of ghorg.")
	cloneCmd.Flags().StringVarP(&githubAppPemPath, "github-app-pem-path", "", "", "GHORG_GITHUB_APP_PEM_PATH - Path to your GitHub App PEM file, for authenticating with GitHub App.")
	cloneCmd.Flags().StringVarP(&githubAppInstallationID, "github-app-installation-id", "", "", "GHORG_GITHUB_APP_INSTALLATION_ID - GitHub App Installation ID, for authenticating with GitHub App.")
	cloneCmd.Flags().StringVarP(&githubFilterLanguage, "github-filter-language", "", "", "GHORG_GITHUB_FILTER_LANGUAGE - Filter repos by a language. Can be a comma separated value with no spaces.")
	cloneCmd.Flags().StringVarP(&githubUserOption, "github-user-option", "", "", "GHORG_GITHUB_USER_OPTION - Only available when also using GHORG_CLONE_TYPE: user e.g. --clone-type=user can be one of: all, owner, member (default: owner)")
	cloneCmd.Flags().StringVarP(&githubAppID, "github-app-id", "", "", "GHORG_GITHUB_APP_ID -  GitHub App ID, for authenticating with GitHub App")

	reCloneCmd.Flags().StringVarP(&ghorgReClonePath, "reclone-path", "", "", "GHORG_RECLONE_PATH - If you want to set a path other than $HOME/.config/ghorg/reclone.yaml for your reclone configuration")
	reCloneCmd.Flags().BoolVar(&ghorgReCloneQuiet, "quiet", false, "GHORG_RECLONE_QUIET - Quiet logging output")
	reCloneCmd.Flags().BoolVar(&ghorgReCloneList, "list", false, "Prints reclone commands and optional descriptions to stdout then will exit 0. Does not obsfucate tokens, and is only available as a commandline argument")
	reCloneCmd.Flags().BoolVar(&ghorgReCloneEnvConfigOnly, "env-config-only", false, "GHORG_RECLONE_ENV_CONFIG_ONLY - Only use environment variables to set the configuration for all reclones.")

	lsCmd.Flags().BoolP("long", "l", false, "Display detailed information about each clone directory, including size and number of repositories. Note: This may take longer depending on the number and size of the cloned organizations.")
	lsCmd.Flags().BoolP("total", "t", false, "Display total amounts of all repos cloned. Note: This may take longer depending on the number and size of the cloned organizations.")

	recloneCronCmd.Flags().StringVarP(&cronTimerMinutes, "minutes", "m", "", "GHORG_CRON_TIMER_MINUTES - Number of minutes to run the reclone command on a cron")

	recloneServerCmd.Flags().StringVarP(&recloneServerPort, "port", "p", "", "GHORG_RECLONE_SERVER_PORT - Specifiy the port the reclone server will run on.")

	rootCmd.AddCommand(lsCmd, versionCmd, cloneCmd, reCloneCmd, examplesCmd, recloneServerCmd, recloneCronCmd)
}

func Execute() {
	if err := rootCmd.Execute(); err != nil {
		fmt.Println(err)
		os.Exit(1)
	}
}