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Merge pull request #3689 from bgilbert/bzip2

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app-arch/bzip2: move to overlay; drop bad patch
This commit is contained in:
Benjamin Gilbert 2019-06-06 19:49:34 -04:00 committed by GitHub
commit d50f87ef28
14 changed files with 531 additions and 0 deletions
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1
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/Manifest vendored Normal file
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@ -0,0 +1 @@
DIST bzip2-1.0.6.tar.gz 782025 BLAKE2B b31533af7c71d715e6600874bb0a11b9b3aebbb08af0414a6d88bd5a2ad879a482ad408338159cb6c241815da8f48798d2ea7789ea971431d0be42ee827b0a7e SHA512 00ace5438cfa0c577e5f578d8a808613187eff5217c35164ffe044fbafdfec9e98f4192c02a7d67e01e5a5ccced630583ad1003c37697219b0f147343a3fdd12

117
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/bzip2-1.0.6-r12.ebuild vendored Normal file
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@ -0,0 +1,117 @@
# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
# XXX: atm, libbz2.a is always PIC :(, so it is always built quickly
# (since we're building shared libs) ...
EAPI=6
inherit toolchain-funcs multilib-minimal
DESCRIPTION="A high-quality data compressor used extensively by Gentoo Linux"
HOMEPAGE="https://sourceware.org/bzip2/"
SRC_URI="mirror://gentoo/${P}.tar.gz"
LICENSE="BZIP2"
SLOT="0/1" # subslot = SONAME
KEYWORDS="alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 ~riscv s390 sh sparc x86 ~amd64-fbsd ~x86-fbsd"
IUSE="static static-libs"
PATCHES=(
"${FILESDIR}"/${PN}-1.0.4-makefile-CFLAGS.patch
"${FILESDIR}"/${PN}-1.0.6-saneso.patch
"${FILESDIR}"/${PN}-1.0.4-man-links.patch #172986
"${FILESDIR}"/${PN}-1.0.6-progress.patch
"${FILESDIR}"/${PN}-1.0.3-no-test.patch
"${FILESDIR}"/${PN}-1.0.4-POSIX-shell.patch #193365
"${FILESDIR}"/${PN}-1.0.6-mingw.patch #393573
"${FILESDIR}"/${PN}-1.0.6-out-of-tree-build.patch
"${FILESDIR}"/${PN}-1.0.6-CVE-2016-3189.patch #620466
"${FILESDIR}"/${PN}-1.0.6-ubsan-error.patch
)
DOCS=( CHANGES README{,.COMPILATION.PROBLEMS,.XML.STUFF} manual.pdf )
HTML_DOCS=( manual.html )
src_prepare() {
default
# - Use right man path
# - Generate symlinks instead of hardlinks
# - pass custom variables to control libdir
sed -i \
-e 's:\$(PREFIX)/man:\$(PREFIX)/share/man:g' \
-e 's:ln -s -f $(PREFIX)/bin/:ln -s -f :' \
-e 's:$(PREFIX)/lib:$(PREFIX)/$(LIBDIR):g' \
Makefile || die
}
bemake() {
emake \
VPATH="${S}" \
CC="$(tc-getCC)" \
AR="$(tc-getAR)" \
RANLIB="$(tc-getRANLIB)" \
"$@"
}
multilib_src_compile() {
bemake -f "${S}"/Makefile-libbz2_so all
# Make sure we link against the shared lib #504648
ln -s libbz2.so.${PV} libbz2.so || die
bemake -f "${S}"/Makefile all LDFLAGS="${LDFLAGS} $(usex static -static '')"
}
multilib_src_install() {
into /usr
# Install the shared lib manually. We install:
# .x.x.x - standard shared lib behavior
# .x.x - SONAME some distros use #338321
# .x - SONAME Gentoo uses
dolib.so libbz2.so.${PV}
local v
for v in libbz2.so{,.{${PV%%.*},${PV%.*}}} ; do
dosym libbz2.so.${PV} /usr/$(get_libdir)/${v}
done
use static-libs && dolib.a libbz2.a
if multilib_is_native_abi ; then
gen_usr_ldscript -a bz2
dobin bzip2recover
into /
dobin bzip2
fi
}
multilib_src_install_all() {
# `make install` doesn't cope with out-of-tree builds, nor with
# installing just non-binaries, so handle things ourselves.
insinto /usr/include
doins bzlib.h
into /usr
dobin bz{diff,grep,more}
doman *.1
dosym bzdiff /usr/bin/bzcmp
dosym bzdiff.1 /usr/share/man/man1/bzcmp.1
dosym bzmore /usr/bin/bzless
dosym bzmore.1 /usr/share/man/man1/bzless.1
local x
for x in bunzip2 bzcat bzip2recover ; do
dosym bzip2.1 /usr/share/man/man1/${x}.1
done
for x in bz{e,f}grep ; do
dosym bzgrep /usr/bin/${x}
dosym bzgrep.1 /usr/share/man/man1/${x}.1
done
einstalldocs
# move "important" bzip2 binaries to /bin and use the shared libbz2.so
dosym bzip2 /bin/bzcat
dosym bzip2 /bin/bunzip2
}

9
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/files/bzip2-1.0.3-no-test.patch vendored Normal file
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@ -0,0 +1,9 @@
--- a/Makefile
+++ b/Makefile
@@ -23,5 +23,5 @@
bzlib.o
-all: libbz2.a bzip2 bzip2recover test
+all: libbz2.a bzip2 bzip2recover
bzip2: libbz2.a bzip2.o

21
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/files/bzip2-1.0.4-POSIX-shell.patch vendored Normal file
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@ -0,0 +1,21 @@
bzgrep uses !/bin/sh but then uses the bashism ${var//} so replace those
with calls to sed so POSIX shells work
http://bugs.gentoo.org/193365
--- a/bzgrep
+++ b/bzgrep
@@ -63,10 +63,9 @@
bzip2 -cdfq "$i" | $grep $opt "$pat"
r=$?
else
- j=${i//\\/\\\\}
- j=${j//|/\\|}
- j=${j//&/\\&}
- j=`printf "%s" "$j" | tr '\n' ' '`
+ # the backslashes here are doubled up as we have to escape each one for the
+ # shell and then escape each one for the sed expression
+ j=`printf "%s" "${i}" | sed -e 's:\\\\:\\\\\\\\:g' -e 's:[|]:\\\\|:g' -e 's:[&]:\\\\&:g' | tr '\n' ' '`
bzip2 -cdfq "$i" | $grep $opt "$pat" | sed "s|^|${j}:|"
r=$?
fi

25
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/files/bzip2-1.0.4-makefile-CFLAGS.patch vendored Normal file
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@ -0,0 +1,25 @@
--- a/Makefile
+++ b/Makefile
@@ -18,10 +18,9 @@
CC=gcc
AR=ar
RANLIB=ranlib
-LDFLAGS=
BIGFILES=-D_FILE_OFFSET_BITS=64
-CFLAGS=-Wall -Winline -O2 -g $(BIGFILES)
+CFLAGS+=-Wall -Winline $(BIGFILES) $(CPPFLAGS)
# Where you want it installed when you do 'make install'
PREFIX=/usr/local
--- a/Makefile-libbz2_so
+++ b/Makefile-libbz2_so
@@ -24,7 +24,7 @@
SHELL=/bin/sh
CC=gcc
BIGFILES=-D_FILE_OFFSET_BITS=64
-CFLAGS=-fpic -fPIC -Wall -Winline -O2 -g $(BIGFILES)
+CFLAGS+=-fpic -fPIC -Wall -Winline $(BIGFILES) $(CPPFLAGS)
OBJS= blocksort.o \
huffman.o \

12
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/files/bzip2-1.0.4-man-links.patch vendored Normal file
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@ -0,0 +1,12 @@
http://bugs.gentoo.org/172986
--- a/Makefile
+++ b/Makefile
@@ -85,4 +85,7 @@
cp -f bzip2.1 $(PREFIX)/share/man/man1
chmod a+r $(PREFIX)/share/man/man1/bzip2.1
+ ln -s -f bzip2.1 $(PREFIX)/share/man/man1/bunzip2.1
+ ln -s -f bzip2.1 $(PREFIX)/share/man/man1/bzcat.1
+ ln -s -f bzip2.1 $(PREFIX)/share/man/man1/bzip2recover.1
cp -f bzlib.h $(PREFIX)/include
chmod a+r $(PREFIX)/include/bzlib.h

18
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/files/bzip2-1.0.6-CVE-2016-3189.patch vendored Normal file
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@ -0,0 +1,18 @@
Upstream-Status: Backport
https://bugzilla.suse.com/attachment.cgi?id=681334
CVE: CVE-2016-3189
Signed-off-by: Armin Kuster <akuster@mvista.com>
Index: bzip2-1.0.6/bzip2recover.c
===================================================================
--- a/bzip2recover.c
+++ b/bzip2recover.c
@@ -457,6 +457,7 @@ Int32 main ( Int32 argc, Char** argv )
bsPutUChar ( bsWr, 0x50 ); bsPutUChar ( bsWr, 0x90 );
bsPutUInt32 ( bsWr, blockCRC );
bsClose ( bsWr );
+ outFile = NULL;
}
if (wrBlock >= rbCtr) break;
wrBlock++;

27
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/files/bzip2-1.0.6-mingw.patch vendored Normal file
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@ -0,0 +1,27 @@
make it build for mingw targets
https://bugs.gentoo.org/393573
--- a/bzip2.c
+++ b/bzip2.c
@@ -129,7 +129,7 @@
#if BZ_LCCWIN32
# include <io.h>
# include <fcntl.h>
-# include <sys\stat.h>
+# include <sys/stat.h>
# define NORETURN /**/
# define PATH_SEP '\\'
--- a/bzlib.h
+++ b/bzlib.h
@@ -81,6 +81,9 @@ typedef
/* windows.h define small to char */
# undef small
# endif
+# ifndef WINAPI
+# define WINAPI
+# endif
# ifdef BZ_EXPORT
# define BZ_API(func) WINAPI func
# define BZ_EXTERN extern

79
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/files/bzip2-1.0.6-out-of-tree-build.patch vendored Normal file
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@ -0,0 +1,79 @@
--- a/Makefile
+++ b/Makefile
@@ -53,7 +53,6 @@ libbz2.a: $(OBJS)
check: test
test: bzip2
- @cat words1
./bzip2 -1 < sample1.ref > sample1.rb2
./bzip2 -2 < sample2.ref > sample2.rb2
./bzip2 -3 < sample3.ref > sample3.rb2
@@ -66,7 +65,6 @@ test: bzip2
cmp sample1.tst sample1.ref
cmp sample2.tst sample2.ref
cmp sample3.tst sample3.ref
- @cat words3
install: bzip2 bzip2recover
if ( test ! -d $(PREFIX)/bin ) ; then mkdir -p $(PREFIX)/bin ; fi
@@ -115,25 +113,8 @@ clean:
sample1.rb2 sample2.rb2 sample3.rb2 \
sample1.tst sample2.tst sample3.tst
-blocksort.o: blocksort.c
- @cat words0
- $(CC) $(CFLAGS) -c blocksort.c
-huffman.o: huffman.c
- $(CC) $(CFLAGS) -c huffman.c
-crctable.o: crctable.c
- $(CC) $(CFLAGS) -c crctable.c
-randtable.o: randtable.c
- $(CC) $(CFLAGS) -c randtable.c
-compress.o: compress.c
- $(CC) $(CFLAGS) -c compress.c
-decompress.o: decompress.c
- $(CC) $(CFLAGS) -c decompress.c
-bzlib.o: bzlib.c
- $(CC) $(CFLAGS) -c bzlib.c
-bzip2.o: bzip2.c
- $(CC) $(CFLAGS) -c bzip2.c
-bzip2recover.o: bzip2recover.c
- $(CC) $(CFLAGS) -c bzip2recover.c
+%.o: %.c
+ $(CC) $(CFLAGS) -c $<
distclean: clean
--- a/Makefile-libbz2_so
+++ b/Makefile-libbz2_so
@@ -36,9 +36,7 @@ OBJS= blocksort.o \
all: $(OBJS)
$(CC) $(LDFLAGS) -shared -Wl,-soname -Wl,libbz2.so.1 -o libbz2.so.1.0.6 $(OBJS)
- $(CC) $(LDFLAGS) $(CFLAGS) -o bzip2-shared bzip2.c libbz2.so.1.0.6
- rm -f libbz2.so.1.0
- ln -s libbz2.so.1.0.6 libbz2.so.1.0
+ ln -sf libbz2.so.1.0.6 libbz2.so.1.0
clean:
rm -f $(OBJS) bzip2.o libbz2.so.1.0.6 libbz2.so.1.0 bzip2-shared
@@ -43,17 +43,5 @@ all: $(OBJS)
clean:
rm -f $(OBJS) bzip2.o libbz2.so.1.0.6 libbz2.so.1.0 bzip2-shared
-blocksort.o: blocksort.c
- $(CC) $(CFLAGS) -c blocksort.c
-huffman.o: huffman.c
- $(CC) $(CFLAGS) -c huffman.c
-crctable.o: crctable.c
- $(CC) $(CFLAGS) -c crctable.c
-randtable.o: randtable.c
- $(CC) $(CFLAGS) -c randtable.c
-compress.o: compress.c
- $(CC) $(CFLAGS) -c compress.c
-decompress.o: decompress.c
- $(CC) $(CFLAGS) -c decompress.c
-bzlib.o: bzlib.c
- $(CC) $(CFLAGS) -c bzlib.c
+%.o: %.c
+ $(CC) $(CFLAGS) -c $<

163
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/files/bzip2-1.0.6-progress.patch vendored Normal file
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@ -0,0 +1,163 @@
Ripped from Mandrake
http://bugs.gentoo.org/82192
--- a/bzip2.1
+++ b/bzip2.1
@@ -235,6 +235,10 @@
Suppress non-essential warning messages. Messages pertaining to
I/O errors and other critical events will not be suppressed.
.TP
+.B \-p \-\-show\-progress
+Show percentage of input\-file done and while compressing show the percentage
+of the original file the new file is.
+.TP
.B \-v --verbose
Verbose mode -- show the compression ratio for each file processed.
Further \-v's increase the verbosity level, spewing out lots of
--- a/bzip2.c
+++ b/bzip2.c
@@ -145,6 +145,7 @@
#include <signal.h>
#include <math.h>
#include <errno.h>
+#include <time.h>
#include <ctype.h>
#include "bzlib.h"
@@ -301,6 +302,7 @@
Char progNameReally[FILE_NAME_LEN];
FILE *outputHandleJustInCase;
Int32 workFactor;
+Char showProgress;
static void panic ( Char* ) NORETURN;
static void ioError ( void ) NORETURN;
@@ -425,6 +427,12 @@
UInt32 nbytes_in_lo32, nbytes_in_hi32;
UInt32 nbytes_out_lo32, nbytes_out_hi32;
Int32 bzerr, bzerr_dummy, ret;
+ double fileSize = 0; /* initialized to make the compiler stop crying */
+ /* double because big files might otherwhise give
+ * overflows. not long long since not all compilers
+ * support that one
+ */
+ time_t startTime, currentTime;
SET_BINARY_MODE(stream);
SET_BINARY_MODE(zStream);
@@ -432,12 +440,21 @@
if (ferror(stream)) goto errhandler_io;
if (ferror(zStream)) goto errhandler_io;
+ if ((srcMode == SM_F2F || srcMode == SM_F2O) && showProgress == True) {
+ (void)fseek(stream, 0, SEEK_END);
+ fileSize = ftello(stream);
+ rewind(stream);
+ if (verbosity >= 1)
+ fprintf(stderr, "Input-file size: %ld\n", (long)fileSize);
+ }
+
bzf = BZ2_bzWriteOpen ( &bzerr, zStream,
blockSize100k, verbosity, workFactor );
if (bzerr != BZ_OK) goto errhandler;
if (verbosity >= 2) fprintf ( stderr, "\n" );
+ time(&startTime);
while (True) {
if (myfeof(stream)) break;
@@ -446,6 +463,22 @@
if (nIbuf > 0) BZ2_bzWrite ( &bzerr, bzf, (void*)ibuf, nIbuf );
if (bzerr != BZ_OK) goto errhandler;
+ if ((srcMode == SM_F2F || srcMode == SM_F2O) && showProgress == True) {
+ time(&currentTime);
+
+ if ((currentTime - startTime) > 1) { /* show progress every 2 seconds */
+ double curInPos = ftello(stream);
+ double curOutPos = ftello(zStream);
+
+ startTime = currentTime;
+
+ fprintf(stderr, "%.2f%% done", (curInPos * 100.0) / fileSize);
+ if (srcMode == SM_F2F)
+ fprintf(stderr, ", new size: %.2f%%", (curOutPos * 100.0) / curInPos);
+
+ fprintf(stderr, " \r");
+ }
+ }
}
BZ2_bzWriteClose64 ( &bzerr, bzf, 0,
@@ -526,6 +559,8 @@
UChar unused[BZ_MAX_UNUSED];
Int32 nUnused;
UChar* unusedTmp;
+ double fileSize = 0; /* initialized to make the compiler stop crying */
+ time_t startTime, currentTime;
nUnused = 0;
streamNo = 0;
@@ -533,9 +568,19 @@
SET_BINARY_MODE(stream);
SET_BINARY_MODE(zStream);
+ if ((srcMode == SM_F2F || srcMode == SM_F2O) && showProgress == True) {
+ off_t dummy = ftello(zStream);
+ (void)fseeko(zStream, 0, SEEK_END);
+ fileSize = ftello(zStream);
+ (void)fseeko(zStream, dummy, SEEK_SET);
+ if (verbosity >= 1)
+ fprintf(stderr, "Input-file size: %ld\n", (long)fileSize);
+ }
+
if (ferror(stream)) goto errhandler_io;
if (ferror(zStream)) goto errhandler_io;
+ time(&startTime);
while (True) {
bzf = BZ2_bzReadOpen (
@@ -551,6 +596,16 @@
if ((bzerr == BZ_OK || bzerr == BZ_STREAM_END) && nread > 0)
fwrite ( obuf, sizeof(UChar), nread, stream );
if (ferror(stream)) goto errhandler_io;
+
+ if ((srcMode == SM_F2F || srcMode == SM_F2O) && showProgress == True) {
+ time(&currentTime);
+ if ((currentTime - startTime) >= 2) {
+ double curInPos = ftello(zStream);
+ startTime = currentTime;
+
+ fprintf(stderr, "%.2f%% done\r", (curInPos * 100.0) / fileSize);
+ }
+ }
}
if (bzerr != BZ_STREAM_END) goto errhandler;
@@ -1872,6 +1927,7 @@
deleteOutputOnInterrupt = False;
exitValue = 0;
i = j = 0; /* avoid bogus warning from egcs-1.1.X */
+ showProgress = False;
/*-- Set up signal handlers for mem access errors --*/
signal (SIGSEGV, mySIGSEGVorSIGBUScatcher);
@@ -1949,6 +2005,7 @@
case 'k': keepInputFiles = True; break;
case 's': smallMode = True; break;
case 'q': noisy = False; break;
+ case 'p': showProgress = True; break;
case '1': blockSize100k = 1; break;
case '2': blockSize100k = 2; break;
case '3': blockSize100k = 3; break;
@@ -1985,6 +2042,7 @@
if (ISFLAG("--keep")) keepInputFiles = True; else
if (ISFLAG("--small")) smallMode = True; else
if (ISFLAG("--quiet")) noisy = False; else
+ if (ISFLAG("--show-progress")) showProgress = True; else
if (ISFLAG("--version")) license(); else
if (ISFLAG("--license")) license(); else
if (ISFLAG("--exponential")) workFactor = 1; else

13
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/files/bzip2-1.0.6-saneso.patch vendored Normal file
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@ -0,0 +1,13 @@
--- a/Makefile-libbz2_so
+++ b/Makefile-libbz2_so
@@ -35,8 +35,8 @@
bzlib.o
all: $(OBJS)
- $(CC) -shared -Wl,-soname -Wl,libbz2.so.1.0 -o libbz2.so.1.0.6 $(OBJS)
- $(CC) $(CFLAGS) -o bzip2-shared bzip2.c libbz2.so.1.0.6
+ $(CC) $(LDFLAGS) -shared -Wl,-soname -Wl,libbz2.so.1 -o libbz2.so.1.0.6 $(OBJS)
+ $(CC) $(LDFLAGS) $(CFLAGS) -o bzip2-shared bzip2.c libbz2.so.1.0.6
rm -f libbz2.so.1.0
ln -s libbz2.so.1.0.6 libbz2.so.1.0

24
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/files/bzip2-1.0.6-ubsan-error.patch vendored Normal file
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@ -0,0 +1,24 @@
Author: Manoj Gupta <manojgupta@google.com>
Use unsigned 1 for shifting instead of signed 1.
This fixed an issue with shift caught by undefined behavior
sanitizer in clang.
bzip2-1.0.6/blocksort.c:255:7
runtime error: left shift of 1 by 31 places cannot be represented in type 'int'
--- a/blocksort.c
+++ b/blocksort.c
@@ -202,9 +202,9 @@ void fallbackQSort3 ( UInt32* fmap,
bhtab [ 0 .. 2+(nblock/32) ] destroyed
*/
-#define SET_BH(zz) bhtab[(zz) >> 5] |= (1 << ((zz) & 31))
-#define CLEAR_BH(zz) bhtab[(zz) >> 5] &= ~(1 << ((zz) & 31))
-#define ISSET_BH(zz) (bhtab[(zz) >> 5] & (1 << ((zz) & 31)))
+#define SET_BH(zz) bhtab[(zz) >> 5] |= (1u << ((zz) & 31))
+#define CLEAR_BH(zz) bhtab[(zz) >> 5] &= ~(1u << ((zz) & 31))
+#define ISSET_BH(zz) (bhtab[(zz) >> 5] & (1u << ((zz) & 31)))
#define WORD_BH(zz) bhtab[(zz) >> 5]
#define UNALIGNED_BH(zz) ((zz) & 0x01f)

11
sdk_container/src/third_party/coreos-overlay/app-arch/bzip2/metadata.xml vendored Normal file
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@ -0,0 +1,11 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="project">
<email>base-system@gentoo.org</email>
<name>Gentoo Base System</name>
</maintainer>
<upstream>
<remote-id type="cpe">cpe:/a:bzip:bzip2</remote-id>
</upstream>
</pkgmetadata>

11
sdk_container/src/third_party/coreos-overlay/metadata/md5-cache/app-arch/bzip2-1.0.6-r12 vendored Normal file
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@ -0,0 +1,11 @@
DEFINED_PHASES=compile configure install prepare test
DESCRIPTION=A high-quality data compressor used extensively by Gentoo Linux
EAPI=6
HOMEPAGE=https://sourceware.org/bzip2/
IUSE=static static-libs abi_x86_32 abi_x86_64 abi_x86_x32 abi_mips_n32 abi_mips_n64 abi_mips_o32 abi_riscv_lp64d abi_riscv_lp64 abi_s390_32 abi_s390_64
KEYWORDS=alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 ~riscv s390 sh sparc x86 ~amd64-fbsd ~x86-fbsd
LICENSE=BZIP2
SLOT=0/1
SRC_URI=mirror://gentoo/bzip2-1.0.6.tar.gz
_eclasses_=multibuild 40fe59465edacd730c644ec2bc197809 multilib 1d91b03d42ab6308b5f4f6b598ed110e multilib-build 0d0c25170069d06d0eb233154229af97 multilib-minimal 8bddda43703ba94d8341f4e247f97566 toolchain-funcs 8c7f9d80beedd16f2e5a7f612c609529
_md5_=1ff50a224acdb8ed8fed287949d66850