sys-apps/portage: refresh patches and ensure they are applied

Found this while checking why I was still seeing lots of

  !!! Section 'gentoo' in repos.conf is missing location attribute

messages while building. Turns out that after the last sync of portage we
stopped applying patches from files/. This was caused by a local variable
definition of PATCHES that was overriding the global one.

This might be a sign to drop them or we can refresh them, as they do fix bugs
that have been hit in CoreOS in the past. I opted to refresh them, and inject
them into the local variable.

sdk_container/src/third_party/coreos-overlay/sys-apps/portage/files/0001-portage-repository-config.py-add-disabled-attribute-.patch

@@ -1,4 +1,4 @@
-From eeb6911796e6d602cb12c91901fb4ab1f37dca65 Mon Sep 17 00:00:00 2001
+From c6cfe7c55f54504aa50bc6daca31aefde0d24264 Mon Sep 17 00:00:00 2001
 From: Alex Crawford <alex.crawford@coreos.com>
 Date: Tue, 27 Oct 2020 19:43:48 +0100
 Subject: [PATCH 1/3] portage/repository/config.py: add disabled attribute to
@@ -12,18 +12,18 @@ https://bugs.gentoo.org/507284
  1 file changed, 10 insertions(+), 1 deletion(-)
 
 diff --git a/lib/portage/repository/config.py b/lib/portage/repository/config.py
-index f7c956d..28ec102 100644
+index 0b591d9..7b7f7a1 100644
 --- a/lib/portage/repository/config.py
 +++ b/lib/portage/repository/config.py
-@@ -77,6 +77,7 @@ class RepoConfig:
- 		'clone_depth',
- 		'create_manifest',
- 		'disable_manifest',
-+		'disabled',
- 		'eapi',
- 		'eclass_db',
- 		'eclass_locations',
-@@ -275,6 +276,11 @@ class RepoConfig:
+@@ -113,6 +113,7 @@ class RepoConfig:
+         "clone_depth",
+         "create_manifest",
+         "disable_manifest",
++        "disabled",
+         "eapi",
+         "eclass_db",
+         "eclass_locations",
+@@ -318,6 +319,11 @@ class RepoConfig:
              location = None
          self.location = location
  
@@ -35,7 +35,7 @@ index f7c956d..28ec102 100644
          missing = True
          self.name = name
          if self.location is not None:
-@@ -754,7 +760,10 @@ class RepoConfigLoader:
+@@ -845,7 +851,10 @@ class RepoConfigLoader:
          # Do this before expanding aliases, so that location_map and
          # treemap consistently map unaliased names whenever available.
          for repo_name, repo in list(prepos.items()):
@@ -44,9 +44,9 @@ index f7c956d..28ec102 100644
 +                del prepos[repo_name]
 +                continue
 +            elif repo.location is None:
- 				if repo_name != 'DEFAULT':
+                 if repo_name != "DEFAULT":
                      # Skip this warning for repoman (bug #474578).
                      if settings.local_config and paths:
 -- 
-2.26.2
+2.32.0
 

sdk_container/src/third_party/coreos-overlay/sys-apps/portage/files/0002-environment-Filter-EROOT-for-all-EAPIs.patch

@@ -1,4 +1,4 @@
-From 9e7ba8e73d8e043a91d215af4b4fcdb8e37921f5 Mon Sep 17 00:00:00 2001
+From a6c80be38b1492d16a3b721564dea5a2ac4106c5 Mon Sep 17 00:00:00 2001
 From: Michael Marineau <mike@marineau.org>
 Date: Tue, 27 Oct 2020 19:47:20 +0100
 Subject: [PATCH 2/3] environment: Filter EROOT for all EAPIs
@@ -12,7 +12,7 @@ https://bugs.gentoo.org/490014
  1 file changed, 7 insertions(+), 3 deletions(-)
 
 diff --git a/bin/phase-functions.sh b/bin/phase-functions.sh
-index 90e622e..ec7b18b 100644
+index d322199..dc6bf62 100644
 --- a/bin/phase-functions.sh
 +++ b/bin/phase-functions.sh
 @@ -107,10 +107,14 @@ __filter_readonly_variables() {
@@ -34,5 +34,5 @@ index 90e622e..ec7b18b 100644
  			filtered_vars+=" ESYSROOT"
  		fi
 -- 
-2.26.2
+2.32.0
 

sdk_container/src/third_party/coreos-overlay/sys-apps/portage/files/0003-depgraph-ensure-slot-rebuilds-happen-in-the-correct-.patch

@@ -1,4 +1,4 @@
-From 91f1cc6fa46e149094a7021f43b10bd13d39b7d9 Mon Sep 17 00:00:00 2001
+From 0d6b2b32bd9fe1399d338c90eccbf6d3f7c4a6cb Mon Sep 17 00:00:00 2001
 From: Michael Marineau <mike@marineau.org>
 Date: Tue, 27 Oct 2020 19:50:07 +0100
 Subject: [PATCH 3/3] depgraph: ensure slot rebuilds happen in the correct root
@@ -9,10 +9,10 @@ https://bugs.gentoo.org/520112
  1 file changed, 4 insertions(+), 4 deletions(-)
 
 diff --git a/lib/_emerge/depgraph.py b/lib/_emerge/depgraph.py
-index 0bb0352..3d1cdbc 100644
+index 22d0be1..67e096a 100644
 --- a/lib/_emerge/depgraph.py
 +++ b/lib/_emerge/depgraph.py
-@@ -4384,13 +4384,13 @@ class depgraph:
+@@ -5007,13 +5007,13 @@ class depgraph:
          a favorite list."""
          debug = "--debug" in self._frozen_config.myopts
          onlydeps = "--onlydeps" in self._frozen_config.myopts
@@ -29,7 +29,7 @@ index 0bb0352..3d1cdbc 100644
 +            virtuals = pkgsettings.getvirtuals()
              for atom in sorted(arg.pset.getAtoms()):
                  self._spinner_update()
- 				dep = Dependency(atom=atom, onlydeps=onlydeps,
+                 dep = Dependency(atom=atom, onlydeps=onlydeps, root=myroot, parent=arg)
 -- 
-2.26.2
+2.32.0
 

sdk_container/src/third_party/coreos-overlay/sys-apps/portage/portage-3.0.28-r1.ebuild

@@ -94,6 +94,8 @@ pkg_pretend() {
 python_prepare_all() {
 	local PATCHES=(
 		"${DISTDIR}"/${P}-setuptools-install-depr.patch
+		# Flatcar: downstream patches
+		"${PATCHES[@]}"
 	)
 
 	distutils-r1_python_prepare_all