licenses: Sync with Gentoo

It's from Gentoo commit 627be0b46ad0946d66d073158826904f3540ead4.
This commit is contained in:
Flatcar Buildbot 2024-07-29 07:17:30 +00:00 committed by Krzesimir Nowak
parent 6716e8969e
commit 1f009fa528
6 changed files with 166 additions and 570 deletions

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Blender License 1.0 (the "BL", see http://www.blender.org/BL/ ).
Copyright (C) 2002 Blender Foundation. All Rights Reserved.
For teams that don't want to operate under the GPL, we're also offering
this "non-GPL" Blender License option. This means that you can download
the latest sources and tools via FTP or CVS from our site and sign an
additional agreement with the Blender Foundation, so you can keep your
source modifications confidential. Contact the Blender Foundation via
email at license@blender.org so we can discuss how we handle the
practical matters.
A signed agreement allows you to do business with proprietary code, make
special derived versions, sell executables, projects or services,
provided that:
1. The BL-ed code remains copyrighted by the original owners, and cannot
be transferred to other parties
2. The BL-ed code cannot be published or re-distributed in any way, and
only be available for the internal staff that works directly on the
software itself. Employees of partners with which you co-develop on the
projects that include BL-ed code are considered 'internal staff' also.
3. The BL-ed code can be used (sold, distributed) in parts or in its
whole only as an executable or as a compiled library/module and its
header files.
4. The usage of the name Blender or the Blender logo is not included in
this license. Instead 'including Blender Foundation release X' (or
similar) can be used, with 'X' the version number of the initial Blender
Foundation release which you started with.
5. Note that this BL has no authority over some of the external
libraries licenses which Blender links with.
Additionally you get :
1. The right to use Blender Foundation source updates for a 1 year
period.
2. Support. Details to be determined by the additional agreement.
You are invited to donate your proprietary changes back to the open
source community after a reasonable time period. You are of course free
to choose not to do this.
End of BL terms and conditions.

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End User License Agreement
YOU SHOULD CAREFULLY READ THE FOLLOWING END USER LICENSE AGREEMENT
BEFORE INSTALLING THIS SOFTWARE PROGRAM. BY INSTALLING OR OTHERWISE
USING THE SOFTWARE PROGRAM, YOU AGREE TO BE BOUND BY THE TERMS OF THIS
AGREEMENT.
This software program (the "Program"), any printed materials, any
on-line or electronic documentation (the "Manuals"), and any and all
copies and derivative works of such software program are the
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rights reserved, except as expressly stated herein. All use of the
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("License Agreement"). The Program is solely for use by end users
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or redistribution of the Program not in accordance with the terms of
the Licence Agreement is expressly prohibited.
1. Limited Use License. Linux Game Publishing ("LGP") hereby grants,
and by installing the Program you thereby accept, a limited,
non-exclusive license and right to install and use one (1) copy of the
Program for your use on either a home, business, or portable
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but not limited to any titles, computer code, themes, objects,
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Agreement supersedes any prior or contemporaneous agreement, either
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Linux Game Publishing LTD
17 Rossington Road
Nottingham, NG2 4HX, England

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VirtualBox Extension Pack Personal Use and Educational License (PUEL)
License version 12, 22 July 2024
PLEASE READ THE FOLLOWING ORACLE VIRTUALBOX EXTENSION PACK PERSONAL USE
AND EDUCATIONAL LICENSE CAREFULLY BEFORE DOWNLOADING OR USING THE ORACLE
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ORACLE AMERICA, INC. ("ORACLE") IS WILLING TO LICENSE THE PRODUCT DEFINED
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+--------------------------------------------------------------------+
| |
| University of Illinois |
| NAMD Molecular Dynamics Software |
| Non-Exclusive, Non-Commercial Use License |
| |
+--------------------------------------------------------------------+
Upon execution of this Agreement by the party identified below ("Licensee"),
The Board of Trustees of the University of Illinois ("Illinois"), on behalf
of The Theoretical and Computational Biophysics Group ("TCBG") in the Beckman
Institute, will provide the NAMD molecular dynamics software ("NAMD") in
Executable Code and/or Source Code form ("Software") to Licensee, subject to
the following terms and conditions. For purposes of this Agreement,
Executable Code is the compiled code, which is ready to run on Licensee's
computer. Source code consists of a set of files which contain the actual
program commands that are compiled to form the Executable Code.
1. The Software is intellectual property owned by Illinois, and all right,
title and interest, including copyright, remain with Illinois. Illinois
grants, and Licensee hereby accepts, a restricted, non-exclusive,
non-transferable license to use the Software for academic, research and
internal business purposes only, e.g. not for commercial use (see Clause 7
below), without a fee.
2. Licensee may, at its own expense, create and freely distribute
complimentary works that interoperate with the Software, directing others to
the TCBG server to license and obtain the Software itself. Licensee may, at
its own expense, modify the Software to make derivative works. Except as
explicitly provided below, this License shall apply to any derivative work
as it does to the original Software distributed by Illinois. Any derivative
work should be clearly marked and renamed to notify users that it is a
modified version and not the original Software distributed by Illinois.
Licensee agrees to reproduce the copyright notice and other proprietary
markings on any derivative work and to include in the documentation of such
work the acknowledgement:
"This software includes code developed by the Theoretical and Computational
Biophysics Group in the Beckman Institute for Advanced Science and
Technology at the University of Illinois at Urbana-Champaign."
Licensee may redistribute without restriction works with up to 1/2 of their
non-comment source code derived from at most 1/10 of the non-comment source
code developed by Illinois and contained in the Software, provided that the
above directions for notice and acknowledgement are observed. Any other
distribution of the Software or any derivative work requires a separate
license with Illinois. Licensee may contact Illinois (namd@ks.uiuc.edu) to
negotiate an appropriate license for such distribution.
3. Except as expressly set forth in this Agreement, THIS SOFTWARE IS PROVIDED
"AS IS" AND ILLINOIS MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF
ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES
OR MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT THE USE OF
THE SOFTWARE WILL NOT INFRINGE ANY PATENT, TRADEMARK, OR OTHER RIGHTS.
LICENSEE ASSUMES THE ENTIRE RISK AS TO THE RESULTS AND PERFORMANCE OF THE
SOFTWARE AND/OR ASSOCIATED MATERIALS. LICENSEE AGREES THAT UNIVERSITY SHALL
NOT BE HELD LIABLE FOR ANY DIRECT, INDIRECT, CONSEQUENTIAL, OR INCIDENTAL
DAMAGES WITH RESPECT TO ANY CLAIM BY LICENSEE OR ANY THIRD PARTY ON ACCOUNT
OF OR ARISING FROM THIS AGREEMENT OR USE OF THE SOFTWARE AND/OR ASSOCIATED
MATERIALS.
4. Licensee understands the Software is proprietary to Illinois. Licensee
agrees to take all reasonable steps to insure that the Software is
protected and secured from unauthorized disclosure, use, or release and
will treat it with at least the same level of care as Licensee would use to
protect and secure its own proprietary computer programs and/or information,
but using no less than a reasonable standard of care. Licensee agrees to
provide the Software only to any other person or entity who has registered
with Illinois. If licensee is not registering as an individual but as an
institution or corporation each member of the institution or corporation
who has access to or uses Software must agree to and abide by the terms
of this license. If Licensee becomes aware of any unauthorized licensing,
copying or use of the Software, Licensee shall promptly notify Illinois
in writing. Licensee expressly agrees to use the Software only in the
manner and for the specific uses authorized in this Agreement.
5. By using or copying this Software, Licensee agrees to abide by the
copyright law and all other applicable laws of the U.S. including, but not
limited to, export control laws and the terms of this license. Illinois
shall have the right to terminate this license immediately by written
notice upon Licensee's breach of, or non-compliance with, any
terms of the license. Licensee may be held legally responsible for any
copyright infringement that is caused or encouraged by its failure to
abide by the terms of this license. Upon termination, Licensee agrees to
destroy all copies of the Software in its possession and to verify such
destruction in writing.
6. The user agrees that any reports or published results obtained with
the Software will acknowledge its use by the appropriate citation as
follows:
"NAMD was developed by the Theoretical and Computational Biophysics Group in
the Beckman Institute for Advanced Science and Technology at the University
of Illinois at Urbana-Champaign."
Any published work which utilizes NAMD shall include the following reference:
"Laxmikant Kale, Robert Skeel, Milind Bhandarkar, Robert Brunner,
Attila Gursoy, Neal Krawetz, James Phillips, Aritomo Shinozaki,
Krishnan Varadarajan, and Klaus Schulten. NAMD2: Greater scalability
for parallel molecular dynamics. J. Comp. Phys., 151:283-312, 1999."
Electronic documents will include a direct link to the official NAMD page
at http://www.ks.uiuc.edu/Research/namd/
7. Commercial use of the Software, or derivative works based thereon,
REQUIRES A COMMERCIAL LICENSE. Should Licensee wish to make commercial
use of the Software, Licensee will contact Illinois (namd@ks.uiuc.edu) to
negotiate an appropriate license for such use. Commercial use includes:
(1) integration of all or part of the Software into a product for sale,
lease or license by or on behalf of Licensee to third parties, or
(2) distribution of the Software to third parties that need it to
commercialize product sold or licensed by or on behalf of Licensee.
8. Government Rights. Because substantial governmental funds have been
used in the development of NAMD, any possession, use or sublicense of the
Software by or to the United States government shall be subject to such
required restrictions.
9. NAMD is being distributed as a research and teaching tool and as
such, TCBG encourages contributions from users of the code that might, at
Illinois' sole discretion, be used or incorporated to make the basic
operating framework of the Software a more stable, flexible, and/or useful
product. Licensees who contribute their code to become an internal
portion of the Software agree that such code may be distributed by
Illinois under the terms of this License and may be required to sign an
"Agreement Regarding Contributory Code for NAMD Software" before Illinois
can accept it (contact namd@ks.uiuc.edu for a copy).
UNDERSTOOD AND AGREED.
Contact Information:
The best contact path for licensing issues is by e-mail to
namd@ks.uiuc.edu or send correspondence to:
NAMD Team
Theoretical and Computational Biophysics Group
Beckman Institute
University of Illinois
405 North Mathews MC-251
Urbana, Illinois 61801 USA
FAX: (217) 244-6078

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Relating organizations and author have No liability for any loss of profits
whatever arising from the use of this product. Permission to use and copy this
software and its documentation is hereby granted.
This software is free to be modified only for academic purpose and personal use.
However, We do Not assume responsibility for any personally customized versions.
Copyright (c) 2010 Olivia Developer Team, Hokkaido University.

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PROCHECK - Stereochemical Quality of Protein Structures
-------------------------------------------------------
and AQUA for PROCHECK-NMR
-------------------------
CONFIDENTIALITY AGREEMENT
-------------------------
In regard to the PROCHECK suite of programs, specified in Appendix 1
herewith and the AQUA suite of programs specified in Appendix 2 herewith
(the Software) supplied to us, the copyright and other intellectual
property rights to which belong to the authors, we
__________________________________________________________________
undertake to the authors that we shall be bound by the following terms and
conditions:-
1. We will receive the Software and any related documentation in confidence
and will not use the same except for the purpose of the department's own
research. The Software will be used only by such of our officers or
employees to whom it must reasonably be communicated to enable us to
undertake our research and who agree to be bound by the same confidence.
The department shall procure and enforce such agreement from its staff for
the benefit of the authors.
2. The publication of research using the Software must reference
"Laskowski R A, MacArthur M W, Moss D S & Thornton J M (1993). PROCHECK:
a program to check the stereochemical quality of protein
structures. J. Appl. Cryst., 26, 283-291."
and
"Rullmann J A C (1996). AQUA, Computer Program, Department of NMR
Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht
University, The Netherlands."
3. Research shall take place solely at the department's premises at
__________________________________________________________________
4. All forms of the Software will be kept in a reasonably secure place to
prevent unauthorised access.
5. Each copy of the Software or, if not practicable then, any package
associated therewith shall be suitably marked (and such marking maintained)
with the following copyright notice: " Copyright 1992 M W MacArthur, R A
Laskowski, D S Moss, J A C Rullmann & J M Thornton All Rights Reserved".
6. The Software may be modified but any changes made shall be made
available to the authors.
7. The Software shall be used exclusively for academic teaching and
research. The Software will not be used for any commercial research or
research associated with an industrial company.
8. The confidentiality obligation in paragraph one shall not apply:
(i) to information and data known to the department at the time of
receipt hereunder (as evidenced by its written records);
(ii) to information and data which was at the time of receipt in the
public domain or thereafter becomes so through no wrongful act of
the department;
(iii) to information and data which the department receives from a third
party not in breach of any obligation of confidentiality owed to
the authors.
Please sign this Undertaking and return a copy of it to indicate that you
have read, understood and accepted the above terms.
For and on behalf of _____________________________
_________________________________________________
..................................................
Dated ............................................
APPENDIX 1 - DETAILS OF THE PROCHECK SUITE OF PROGRAMS PROVIDED (v.3.4.3)
---------------------------------------------------------------
Files to be included
--------------------
1. anglen.f }
2. anglen.inc }
3. bplot.f }
4. bplot.inc }
5. brkcln.par }
6. clean.f }
7. gfac2pdb.f }
8. gfac2pdb.inc }
9. mplot.f }
10. mplot.inc } Source program files
11. nb.c }
12. pplot.f }
13. pplot.inc }
14. ps.f }
15. rmsdev.f }
16. rmsdev.inc }
17. secstr.f }
18. sstruc.par }
19. tplot.f }
20. tplot.inc }
21. viol2pdb.f }
22. viol2pdb.inc }
23. vplot.f }
24. vplot.inc }
25. gfac2pdb.scr }
26. procheck.com }
27. procheck.scr }
28. procheck_comp.com }
29. procheck_comp.scr }
30. procheck_nmr.scr }
31. proplot.com }
32. proplot.scr } Script files
33. proplot_comp.scr }
34. proplot_nmr.scr }
35. proplot_comp.com }
36. prosub.com }
37. setup.com }
38. setup.scr }
39. viol2pdb.scr }
40. convax.for }
41. procomp.com } Installation files
42. procomp.scr }
43. maninst.ps }
44. manual.tar.Z } Documentation files
45. nmr_manual.tar.Z }
46. procheck.dat }
47. procheck.prm } Data
48. procheck_comp.prm } files
49. procheck_nmr.prm }
APPENDIX 2 - DETAILS OF THE AQUA SUITE OF PROGRAMS PROVIDED (v.0.40)
-----------------------------------------------------------
Files to be included
--------------------
Source files:-
------------
AquaCalc.c AquaCalc.h
AquaData.h
AquaDist.c AquaDist.h
AquaFiles.c AquaFiles.h
AquaFuncts.c AquaFuncts.h
AquaFuncts_biosym.c AquaFuncts_biosym.h
AquaFuncts_cv.c AquaFuncts_cv.h
AquaFuncts_io.c AquaFuncts_io.h
AquaFuncts_pdb.c AquaFuncts_pdb.h
AquaFuncts_pdbmr.c AquaFuncts_pdbmr.h
AquaHow.c AquaHow.h
AquaMacros.h
AquaPseudo.c AquaPseudo.h
AquaStrucset.c AquaStrucset.h
AquaTypes.h
AquaWhat.c AquaWhat.h
Qext.c Qext.h
Range.c Range.h
cv_subs.h
Script files:-
------------
ReadNrv.pm* convDIANAtorsrestr qdbext*
aqdrst* convDISGEOdistrestr qguessc*
aqpc* convDISGEOtorsrestr qguessr*
aqpcsel convMRTABLE qhelp*
aquanal.pl* convXPLORdistrestr qmodr*
clean0* convXPLORtorsrestr qsplitr*
convBIOSYMdistrestr makecmm* qsumm*
convBIOSYMtorsrestr qconvert* qsumm_aux1*
convDIANAdistrestr qconvr* qsumm_aux2*
Documentation:-
-------------
README models.txt qconvr.txt
aqpc.txt mr.txt qdbext.txt
aqua_setup.txt names.txt qext.txt
biosym.txt overview.txt qhelp.txt
chains.txt perl.txt qsumm.txt
conversion.txt procheck.txt restraint_format.txt
dbas.txt qanal.txt setup.txt
intro.txt qclean.txt torsion.txt
log.txt qconvert.txt xplor.txt
Extras:-
------
joinpdb* splitpdb*
Please complete the above form, sign it, and then send or fax to:-
Roman Laskowski
European Bioinformatics Institute,
Wellcome Trust Genome Campus,
Hinxton,
Cambridge, CB10 1SD,
United Kingdom
Fax:- +44 (0)1223 494 468
If you have any problems either installing the software or running it,
please e-mail your problems to:-
roman@ebi.ac.uk
Questions about AQUA should be directed to Ton Rullmann at
rull@nmr.chem.ruu.nl