mirror of
https://gitlab.alpinelinux.org/alpine/aports.git
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bbed5c792a
new subpackages for -tools, -cpp, -hl, hl-fortran, -hl-cpp enable SZIP support in configuration script enable tests and add checkdepends
174 lines
5.2 KiB
Plaintext
174 lines
5.2 KiB
Plaintext
# Contributor: Isaac Dunham <ibid.ag@gmail.com>
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# Maintainer: Holger Jaekel <holger.jaekel@gmx.de>
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#
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# HDF5 depends on zlib and provides a C interface by default.
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# Optionally, it can be built with szip (which has limitations on
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# commercial use and thus is non-free), MPI, and C++ and Fortran bindings.
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# C++ and Fortran bindings may not be thread-safe:
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# building either and passing --enable-threadsafe is unsupported.
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# Additionally, the 'high-level' bindings are incompatible with threadsafe
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# builds, due to inadequate locking.
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pkgname=hdf5
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pkgver=1.12.2
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pkgrel=1
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pkgdesc="HDF5 is a data model, library, and file format for storing and managing data"
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url="https://www.hdfgroup.org/solutions/hdf5/"
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arch="all"
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license="custom"
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depends_dev="zlib-dev"
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makedepends="cmake $depends_dev gfortran libaec-dev perl"
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checkdepends="diffutils"
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subpackages="$pkgname-tools $pkgname-fortran $pkgname-cpp $pkgname-hl $pkgname-hl-fortran:hl_fortran $pkgname-hl-cpp:hl_cpp $pkgname-static $pkgname-doc $pkgname-dev"
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source="https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${pkgver%.*}/hdf5-$pkgver/src/hdf5-$pkgver.tar.bz2"
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# Optional dependency java-jdk is not available on riscv64
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# Tests fail on s390x and x86
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_with_java=""
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_enable_java=""
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case "$CARCH" in
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riscv64 | s390x | x86) ;;
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*)
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makedepends="$makedepends openjdk8"
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subpackages="$subpackages java-$pkgname:java"
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_with_java="-DHDF5_BUILD_JAVA=ON -DJAVA_HOME=/usr/lib/jvm/default-jvm"
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_enable_java="--enable-java"
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;;
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esac
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# secfixes:
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# 1.12.2-r0:
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# - CVE-2018-17432
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# 1.12.1-r0:
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# - CVE-2018-11206
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# - CVE-2018-13869
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# - CVE-2018-13870
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# - CVE-2018-14033
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# - CVE-2018-14460
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# - CVE-2018-17435
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# - CVE-2019-9151
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# - CVE-2020-10811
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prepare() {
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default_prepare
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update_config_sub
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update_config_guess
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}
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build() {
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if [ "$CBUILD" != "$CHOST" ]; then
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CMAKE_CROSSOPTS="-DCMAKE_SYSTEM_NAME=Linux -DCMAKE_HOST_SYSTEM_NAME=Linux"
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fi
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export PATH=/usr/lib/jvm/default-jvm/bin:$PATH
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# Crazy workaround: run CMake to generate pkg-config file
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# 2nd workaround: cmake creates the file pac_Cconftest.out in the current
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# directory, but checks if it is successfully created in the build dir.
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# So the current directory must be build.
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mkdir build && cd build
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cmake \
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-DCMAKE_INSTALL_PREFIX=/usr \
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-DBUILD_SHARED_LIBS=True \
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-DCMAKE_BUILD_TYPE=None \
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-DCMAKE_CXX_FLAGS="$CXXFLAGS" \
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-DCMAKE_C_FLAGS="$CFLAGS" \
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-DHDF5_BUILD_HL_LIB=ON \
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-DHDF5_BUILD_CPP_LIB=ON \
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-DHDF5_BUILD_FORTRAN=ON \
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$_with_java \
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-DHDF5_ENABLE_Z_LIB_SUPPORT=ON \
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-DHDF5_ENABLE_SZIP_SUPPORT=ON \
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-DHDF5_ENABLE_SZIP_ENCODING=ON \
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-DUSE_LIBAEC=ON \
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-DDEFAULT_API_VERSION=v18 \
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$CMAKE_CROSSOPTS ..
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cd $builddir
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# But don’t build with it, it’s quite broken
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./configure \
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--prefix=/usr \
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--docdir=/usr/share/doc/hdf5/ \
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--with-examplesdir='$prefix/share/doc/hdf5/examples' \
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--enable-static \
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--disable-sharedlib-rpath \
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--enable-build-mode=production \
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--enable-hl \
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--enable-cxx \
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--enable-fortran \
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$_enable_java \
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--with-pic \
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--with-zlib \
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--with-szlib \
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--with-default-api-version=v18
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make
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}
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check() {
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# Without this, checks are failing with messages like
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# "error while loading shared libraries: libhdf5.so.101: cannot open shared object file: No such file or directory"
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export LD_LIBRARY_PATH="$srcdir"/$pkgname-${pkgver/_/-}/src/.libs/
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export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"$srcdir"/$pkgname-${pkgver/_/-}/c++/src/.libs/
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export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"$srcdir"/$pkgname-${pkgver/_/-}/fortran/src/.libs/
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export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"$srcdir"/$pkgname-${pkgver/_/-}/hl/src/.libs/
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export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"$srcdir"/$pkgname-${pkgver/_/-}/hl/c++/src/.libs/
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export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"$srcdir"/$pkgname-${pkgver/_/-}/hl/fortran/src/.libs/
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make check
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}
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package() {
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make DESTDIR="$pkgdir" install
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install -Dm0644 COPYING "$pkgdir"/usr/share/licenses/"$pkgname"/COPYING
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# Install pkg-config files from CMake tree
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install -Dm644 build/CMakeFiles/hdf5*.pc -t "$pkgdir"/usr/lib/pkgconfig/
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}
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tools() {
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pkgdesc="Runtime tools for HDF5 library"
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amove usr/bin/*
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}
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fortran() {
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pkgdesc="Fortran runtime files for serial platforms for HDF5 library"
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amove usr/lib/libhdf5_fortran.so.*
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}
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cpp() {
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pkgdesc="C++ runtime files for serial platforms for HDF5 library"
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amove usr/lib/libhdf5_cpp.so.*
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}
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hl() {
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pkgdesc="High Level C API runtime files for serial platforms for HDF5 library"
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amove usr/lib/libhdf5_hl.so.*
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}
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hl_fortran() {
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pkgdesc="High Level Fortran runtime files for serial platforms for HDF5 library"
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amove usr/lib/libhdf5hl_fortran.so.*
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}
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hl_cpp() {
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pkgdesc="High Level C++ runtime files for serial platforms for HDF5 library"
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amove usr/lib/libhdf5_hl_cpp.so.*
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}
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java() {
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pkgdesc="Java bindings for HDF5 library"
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mkdir -p "$subpkgdir"/usr/share/java/
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mkdir -p "$subpkgdir"/usr/lib/jni/
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mv "$pkgdir"/usr/lib/jarhdf5-$pkgver.jar "$subpkgdir"/usr/share/java/
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ln -s jarhdf5-$pkgver.jar "$subpkgdir"/usr/share/java/jarhdf5.jar
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mv "$pkgdir"/usr/lib/libhdf5_java.so "$subpkgdir"/usr/lib/jni/
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}
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dev() {
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default_dev
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amove usr/lib/libhdf5.settings
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}
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sha512sums="
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cbb4663570de76b11adb6bf62cfdb754371d31eeab04691479a5764a45207a9c1309665ab80f51c63a4b9b87354f9cbe6835cef506a9fd554d142c6d2bec21e5 hdf5-1.12.2.tar.bz2
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"
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